Technical Notes

Validation of protein complex functionality with Tycho NT.6

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3 TECHNICAL NOTE ©2017 NanoTemper Technologies, Inc. South San Francisco, CA, USA. All Rights Reserved. The functionality of the HSAX complex was additionally tested in the same experiment by adding ATP as a ligand (Figure 2). The actin, Arp4 and Arp8 subunits of HSAX are known to bind to ATP. 3,4 The presence of ATP induced marked changes in the unfolding profile of HSAX. The previously observed single unfolding transition changed into two transitions with two clearly distinguishable, higher inflection temperatures, likely representing the different stabilizing effects of ATP on actin and the Arp proteins. Arp4 Act Arp8 HSA N Strep-tag 30 40 50 60 70 80 90 100 0.86 0.88 0.90 0.92 0.94 0.96 0.98 Ratio 350 nm / 330 nm Temperature (°C) Fraction G7 Fraction F3 Reference HSAX 60 80 100 0 50 100 150 200 250 300 350 F3 F5 F7 F8 F9 F10 G2 G5 G7 G11 elution volume (ml) mAU F3 G7 kDa 20 70 50 30 40 25 100 150 200 120 15 10 Marker pooled Strep Elution FT-Strep affinity A B C D Reference 0.880 0.095 57.4 N/A F3 0.879 0.097 57.0 89.5 G7 0.928 0.033 45.6 57.8 36.2 Initial ratio T i (°C) Profile similarity (%) Ratio Sample Figure 1: HSAX quality verification during purification using Tycho NT.6. A ) Schematic representation of the HSAX complex. Act = actin, Arp = actin related protein, HSA = helicase–SANT–associated. B) Elution profile of HSAX a er size-exclusion chromatography with fractions F3 and G7 indicated. C) SDS-PAGE of fractions from size-exclusion chromatography. D) Unfolding profiles of fractions G7 and F3 compared to a reference sample of purified HSAX. Measurement results are summarized in the table. T i = inflection temperature, the temperature at which an unfolding transition occurs and is detected by the system.

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